Plateau GPTR-GENOTYPAGE
(Grand Plateau Technique Régional de Génotypage)
2010
- Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sallet E, Schiex T, Dievart A, Kramer M, Gelley L, Shi Z, Bérard A, Viot C, Boccara M, Risterucci AM, Guignon V, Sabau X, Axtell MJ, Ma Z, Zhang Y, Brown S, Bourge M, Golser W, Song X, Clement D, Rivallan R, Tahi M, Akaza JM, Pitollat B, Gramacho K, D'Hont A, Brunel D, Infante D, Kebe I, Costet P, Wing R, McCombie WR, Guiderdoni E, Quetier F, Panaud O, Wincker P, Bocs S, Lanaud C. The genome of Theobroma cacao. Nature Genetics Year published:(2010) doi:10.1038/ng.736 Accepted 01 December 2010 Published online26 December 2010
- Achtak, H., M. Ater, A. Oukabli, S. Santoni, F. Kjellberg, and B. Khadari. 2010. Traditional agroecosystems as conservatories and incubators of cultivated plant varietal diversity: the case of fig (Ficus carica L.) in Morocco. BMC Plant biology. 10:28.
- Bousalem M., Viader V., Mariac C., Gomez RM., Hochu I., Santoni S., David J. (2010). Evidence of diploidy in the wild Amerindian yam, a putative progenitor of the endangered Dioscorea trifida (Dioscoreaceae). Genome. 53:371-383.
- Foucaud J, Estoup A, Loiseau A, Rey O, Orivel J (2010) Thelytokous parthenogenesis, male clonality and genetic caste determination in the little fire ant: new evidence and insights from the lab. Heredity 105(2):205-212.
- Halkett F, Coste D, Platero GG, Zapater MF, Abadie C, Carlier J (2010) Genetic discontinuities and disequilibria in recently established populations of the plant pathogenic fungus Mycosphaerella fijiensis. Mol Ecol 19(18):3909-3923.
- Herrmann D., Barre P., Santoni S., Julier B. 2010. Association of a Constans Gene to Flowering and Height in Autotetraploid Alfalfa. Theor Appl Genet 121:865–876
- Hippolyte I., Bakry F., Seguin M., Gardes L., Rivallan R., Risterucci A.M., Jenny C., Perrier X., Carreel F., Argout X., Piffanelli P., Khan I.A., Miller R.N.G., Pappas G.J., Mbéguié A Mbéguié D., Matsumoto T., De Bernardinis V., Huttner E., Kilian A 2010. A Saturated SSR/DArT linkage map of Musa acuminata addressing genome rearrangements among bananas. BMC Plant Biology 10(65)
- Billotte N., Jourjon M.F., Marseillac N., Berger A., Flori A., Asmady H., Adon B., Singh R., Nouy B., Potier F., Cheah S.C., Rohde W., Ritter E., Courtois B., Charrier A. 2010. QTL detection by multi-parent linkage mapping in oil palm (Elaeis guineensis Jacq.). Theoretical and Applied Genetics 120(8). 1673-1687.
- Tollenaere C, Duplantier JM, Rahalison L, Ranjalahy M, Brouat C: AFLP genome scan in the black rat (Rattus rattus) from Madagascar: detecting genetic markers undergoing plague-mediated selection. Mol Ecol 2010.
2009
- Fournier-Level, A., L. Le Cunff, C. Gomez, A. Doligez, A. Ageorges, C. Roux, Y. Bertrand, J. Souquet, V. Cheynier, and P. This. 2009. Quantitative genetic bases of anthocyanin variation in grape (Vitis vinifera L. ssp. sativa) Berry. A quantitative trait locus to quantitative trait nucleotide integrated study. Genetics 183:1127-1139.
- Foncéka D., Hodo-Abalo T., Rivallan R., Faye I., Ndoye Sall M., Ndoye O., Favero A.P., Bertioli D.J., Glaszmann J.C., Courtois B., Rami J.F. 2009. Genetic mapping of wild introgressions into cultivated peanut: a way toward enlarging the genetic basis of a recent allotetraploid. BMC Plant biology, 9 (103).
- Kempf F, Boulinier T, De Meeus T, Arnathau C, McCoy KD (2009) Recent evolution of host-associated divergence in the seabird tick Ixodes uriae. Molecular Ecology 18:4450-4462
- Lanaud C., Fouet O., Clément D., Boccara M., Risterucci A.M., Surujdeo-Maharaj S., Legavre T., Argout X. 2009. A meta-QTL analysis of disease resistance traits of Theobroma cacao L.. Molecular breeding, 24 (4) : 361-374.
- Cochard B., Adon B., Rekima S., Billotte N., Desmier De Chenon R., Koutou A., Nouy B., Omoré A., Razak P., Glaszmann J.C., Noyer J.L. 2009. Geographic and genetic structure of African oil palm diversity suggests new approaches to breeding. Tree Genetics and Genomes, 5 (3) : 493-504.
- Leong P, Tsy, J-M, Lumaret R, Mayne D, Vall A, Abutaba Y, Sagna M, Rakotondralambo R, SnO, Danthu P: (2010) Chloroplast DNA phylogeography suggests a West African centre of origin for the baobab, Adansonia digitata L (Bombacoideae, Malvaceae). Molecular Ecology 18:1707-1715.
- Marcano M., Morales S., Hoyer M.T., Courtois B., Risterucci A.M., Fouet O., Pugh T., Cros E., Gonzalez V., Dagert M., Lanaud C. 2009. A genomewide admixture mapping study for yield factors and morphological traits in a cultivated cocoa (Theobroma cacao L.) population. Tree genetics and genomes, 5 : 329-337.
- Musoli C.P., Cubry P., Aluka P., Billot C., Dufour M., De Bellis F., Pot D., Bieysse D., Charrier A., Leroy T. 2009. Genetic differentiation of wild and cultivated populations : Diversity of Coffea canephora Pierre in Uganda. Genome, 52 : 634-646.
- Melo-Ferreira J, Alves PC, Freitas H, Ferrand N, Boursot P (2009) The genomic legacy from the extinct Lepus timidus to the three hare species of Iberia: contrast between mtDNA, sex chromosomes and autosomes. Mol Ecol 18(12):2643-2658.
- Loor Solorzano R.G., Risterucci A.M., Courtois B., Fouet O., Janneau M., Rosenquist E., Amores F., Vasco A., Median M., Lanaud C. 2009. Tracing the native ancestors of modern Theobroma cacao L. population in Ecuador. Tree Genetics and Genomes, 5 (3): 421-433
- Risterucci A.M., Hippolyte I., Perrier X., Xia L., Caig V., Evers M., Huttner E, Kilian A., Glaszmann J.C. 2009. Development and assessment of diversity arrays technology (DArT) for high-throughput DNA analyses in Musa". Theoretical and applied genetics, 119:1093-1103
2008
- Argout X, Fouet O, Wincker P, Gramacho K, Legavre T, Sabau X, Risterucci AM, Da Silva C, Cascardo J, Allegre M, Kuhn D, Verica J, Courtois B, Loor G, Babin R, Sounigo O, Ducamp M, Guiltinan MJ, Ruiz M, Alemanno L, Machado R, Phillips W, Schnell R, Gilmour M, Rosenquist E, Butler D, Maximova S, Lanaud C. 2008 Towards the understanding of the cocoa transcriptome: Production and analysis of an exhaustive dataset of ESTs of Theobroma cacao L. generated from various tissues and under various conditions. BMC genomics 9, 512
- Chapuis MP, Lecoq M, Michalakis Y, Loiseau A, Sword GA, Piry S, Estoup A (2008) Do outbreaks affect genetic population structure? A worldwide survey in Locusta migratoria, a pest plagued by microsatellite null alleles. Molecular Ecology 17(16):3640-3653
- De Alencar Figueiredo L.F., Calatayud C., Dupuits C., Billot C., Rami J.F., Brunel D., Perrier X., Courtois B., Deu M., Glaszmann J.C. 2008. Phylogeographic evidence of crop neodiversity in sorghum. Genetics. 179(2). 997-1008
- Lecunff L., Garsmeur O., Raboin L.M., Pauquet J., Telismart H., Selvi A., Grivet L., Philippe R., Begum D., Deu M., Costet L., Wing R., Glaszmann J.C., D'Hont A. 2008. Diploid/polyploid syntenic shuttle mapping and haplotype-specific chromosome walking toward a rust resistance gene (Bru1) in highly polyploid sugarcane (2n ~ 12x ~ 115). Genetics. 180(1). 649-660.
- Léotard G, Saltmarsh A, Kjellberg F, McKey D (2008)Mutualism, hybrid inviability and speciation in a tropical ant-plant. Journal of Evolutionary Biology 21:1133-1143
- Raboin L.M., Pauquet J., Butterfield M., D'Hont A., Glaszmann J.C. 2008. Analysis of genome-wide linkage disequilibrium in the highly polyploid sugarcane. Theoretical and Applied Genetics. 116(5). 701-714.
- Rajabi-Maham H, Orth A, Bonhomme F (2008) Phylogeography and post-glacial expansion of Mus musculus domesticus inferred from mitochondrial DNA coalescent, from Iran to Europe. Molecular Ecology 17(2):627-641.
- Deu M., Sagnard F., Chantereau J., Calatayud C., Herault D., Mariac C., Pham J.L., Vigouroux Y., Kapran I., Traoré P.S., Mamadou A., Gérard B., Ndjeunga J., Bezançon G. 2008. Niger-wide assessment of in situ sorghum genetic diversity with microsatellite markers. Theoretical and Applied Genetics. 116(7). 903-913.
- Guimarães P.M., Garsmeur O., Proite K., Leal Bertioli S.C.M., Seijo G., Chaine C., Bertioli D.J., D'Hont A. 2008. BAC libraries construction from the ancestral diploid genomes of the allotetraploid cultivated peanut. BMC Plant Biology. 8(14). 8
- Jannoo N., Chantret N., Garsmeur O., Glaszmann J.-C., Arruda P., D\'Hont A. 2007 Orthologous comparison in a gene-rich region among grasses reveals stability in the sugarcane polyploid genome Plant Journal 50(4) 574-585
- O. Jaillon, J.-M. Aury, B. Noël, A. Policriti, C. Clepet, A. Casagrande, N. Choisne, S. Aubourg, N. Vitulo, C. Jubin, A. Vezzi, F. Legeai, P. Hugueney, C. Dasilva, D. Horner, E. Mica, D. Jublot, J. Poulain, C. Bruyère, A. Billault, B. Segurens, M. Gouyvenoux, E. Ugarte, F. Cattonaro, V. Anthouard, V. Vico, C. Del Fabbro, M. Alaux, G. di Gaspero, V. Dumas, N. Felice, S. Paillard, I. Juman, M. Maroldo, S. Scalabrin, A. Canaguier, I. Le Clainche, G. Malacrida, E. Durand, G. Pesole, V. Laucou, P. Chatelet, D. Merdinoglu, M. Delledonne, M. Pezzotti, A. Lecharny, C. Scarpelli, F. Artiguenave, M.-E. Pè, G. Valle, M. Morgante, M. Caboche, A.-F. Adam-Blondon, J. Weissenbach, F. Quétier and P. Wincker 2007 The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 449: 463-467
- Labbe P, Berthomieu A, Berticat C, Alout H, Raymond M, Lenormand T, Weill M (2007) Independent duplications of the acetylcholinesterase gene conferring insecticide resistance in the mosquito Culex pipiens Molecular Biology and Evolution 24(4):1056-1067
- Marcano M., Pugh T., Cros E., Morales S., Portillo E., Courtois B., Glaszmann J.-C., Engels J.M.M., Phillips W., Astorga C., Risterucci A.-M., Fouet O., Gonzalez V., Rosenberg K., Vallat I., Dagert M., Lanaud C. 2007 Adding value to cocoa (Theobroma cacao L.) germplasm information with domestication history and admixture mapping.Theoretical and Applied Genetics 114(5) 877-884
- Le Guen V., Garcia D., Mattos C.R.R., Doare F., Lespinasse D., Seguin M. 2007 Bypassing of a polygenic Microcyclus ulei resistance in rubber tree, analyzed by QTL detection New Phytologist 173(2) 335-345
- Lourmas M, Kjellberg F, Dessard H, Joly H, Chevallier M-H (2007) Reduced density due to logging and its consequences on mating system and pollen flow in the African mahogany Entandrophragma cylindricum. Heredity 99:151-160.
- Melo-Ferreira J, Boursot P, Randi E, Kryukov A, Suchentrunk F, Ferrand N, Alves PC (2007) The rise and fall of the mountain hare (Lepus timidus) during Pleistocene glaciations: expansion and retreat with hybridization in the Iberian Peninsula. Molecular Ecology 16(3):605-618.
- Siol M, Bonnin I, Olivieri I, Prosperi JM, Ronfort J 2007 Effective population size associated with self-fertilization: lessons from temporal changes in allele frequencies in the self annual Medicago truncatula. J. Evol. Biol., 20: 2349-2360
- Lacape M., Dessauw D., Rajab M., Noyer J.-L., Hau B.2007 Microsatellite diversity in tetraploid Gossypium germplasm : assembling a highly informative genotyping set of cotton SSRsMolecular Breeding 19(1) 45-58
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