Rapport d'activités 2010

(Grand Plateau Technique Régional de Génotypage)

Sélection de publications 2007-2010

2010

• Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sallet E, Schiex T, Dievart A, Kramer M, Gelley L, Shi Z, Bérard A, Viot C, Boccara M, Risterucci AM, Guignon V, Sabau X, Axtell MJ, Ma Z, Zhang Y, Brown S, Bourge M, Golser W, Song X, Clement D, Rivallan R, Tahi M, Akaza JM, Pitollat B, Gramacho K, D'Hont A, Brunel D, Infante D, Kebe I, Costet P, Wing R, McCombie WR, Guiderdoni E, Quetier F, Panaud O, Wincker P, Bocs S, Lanaud C. The genome of Theobroma cacao. Nature Genetics Year published:(2010) doi:10.1038/ng.736 Accepted 01 December 2010 Published online26 December 2010
• Achtak, H., M. Ater, A. Oukabli, S. Santoni, F. Kjellberg, and B. Khadari. 2010. Traditional agroecosystems as conservatories and incubators of cultivated plant varietal diversity: the case of fig (Ficus carica L.) in Morocco. BMC Plant biology. 10:28.
• Bousalem M., Viader V., Mariac C., Gomez RM., Hochu I., Santoni S., David J. (2010). Evidence of diploidy in the wild Amerindian yam, a putative progenitor of the endangered Dioscorea trifida (Dioscoreaceae). Genome. 53:371-383.
• Herrmann D., Barre P., Santoni S., Julier B. 2010. Association of a Constans Gene to Flowering and Height in Autotetraploid Alfalfa. Theor Appl Genet 121:865–876
• Hippolyte I., Bakry F., Seguin M., Gardes L., Rivallan R., Risterucci A.M., Jenny C., Perrier X., Carreel F., Argout X., Piffanelli P., Khan I.A., Miller R.N.G., Pappas G.J., Mbéguié A Mbéguié D., Matsumoto T., De Bernardinis V., Huttner E., Kilian A 2010. A Saturated SSR/DArT linkage map of Musa acuminata addressing genome rearrangements among bananas. BMC Plant Biology 10(65)
• Billotte N., Jourjon M.F., Marseillac N., Berger A., Flori A., Asmady H., Adon B., Singh R., Nouy B., Potier F., Cheah S.C., Rohde W., Ritter E., Courtois B., Charrier A. 2010. QTL detection by multi-parent linkage mapping in oil palm (Elaeis guineensis Jacq.). Theoretical and Applied Genetics 120(8). 1673-1687.

2009

• Fournier-Level, A., L. Le Cunff, C. Gomez, A. Doligez, A. Ageorges, C. Roux, Y. Bertrand, J. Souquet, V. Cheynier, and P. This. 2009. Quantitative genetic bases of anthocyanin variation in grape (Vitis vinifera L. ssp. sativa) Berry. A quantitative trait locus to quantitative trait nucleotide integrated study. Genetics 183:1127-1139.
• Foncéka D., Hodo-Abalo T., Rivallan R., Faye I., Ndoye Sall M., Ndoye O., Favero A.P., Bertioli D.J., Glaszmann J.C., Courtois B., Rami J.F. 2009. Genetic mapping of wild introgressions into cultivated peanut: a way toward enlarging the genetic basis of a recent allotetraploid. BMC Plant biology, 9 (103).
• Lanaud C., Fouet O., Clément D., Boccara M., Risterucci A.M., Surujdeo-Maharaj S., Legavre T., Argout X. 2009. A meta-QTL analysis of disease resistance traits of Theobroma cacao L.. Molecular breeding, 24 (4) : 361-374.
• Cochard B., Adon B., Rekima S., Billotte N., Desmier De Chenon R., Koutou A., Nouy B., Omoré A., Razak P., Glaszmann J.C., Noyer J.L. 2009. Geographic and genetic structure of African oil palm diversity suggests new approaches to breeding. Tree Genetics and Genomes, 5 (3) : 493-504.
• Marcano M., Morales S., Hoyer M.T., Courtois B., Risterucci A.M., Fouet O., Pugh T., Cros E., Gonzalez V., Dagert M., Lanaud C. 2009. A genomewide admixture mapping study for yield factors and morphological traits in a cultivated cocoa (Theobroma cacao L.) population. Tree genetics and genomes, 5 : 329-337.
• Musoli C.P., Cubry P., Aluka P., Billot C., Dufour M., De Bellis F., Pot D., Bieysse D., Charrier A., Leroy T. 2009. Genetic differentiation of wild and cultivated populations : Diversity of Coffea canephora Pierre in Uganda. Genome, 52 : 634-646.
• Loor Solorzano R.G., Risterucci A.M., Courtois B., Fouet O., Janneau M., Rosenquist E., Amores F., Vasco A., Median M., Lanaud C. 2009. Tracing the native ancestors of modern Theobroma cacao L. population in Ecuador. Tree Genetics and Genomes, 5 (3): 421-433
• Risterucci A.M., Hippolyte I., Perrier X., Xia L., Caig V., Evers M., Huttner E, Kilian A., Glaszmann J.C. 2009. Development and assessment of diversity arrays technology (DArT) for high-throughput DNA analyses in Musa". Theoretical and applied genetics, 119:1093-1103

2008

• Argout X, Fouet O, Wincker P, Gramacho K, Legavre T, Sabau X, Risterucci AM, Da Silva C, Cascardo J, Allegre M, Kuhn D, Verica J, Courtois B, Loor G, Babin R, Sounigo O, Ducamp M, Guiltinan MJ, Ruiz M, Alemanno L, Machado R, Phillips W, Schnell R, Gilmour M, Rosenquist E, Butler D, Maximova S, Lanaud C. 2008 Towards the understanding of the cocoa transcriptome: Production and analysis of an exhaustive dataset of ESTs of Theobroma cacao L. generated from various tissues and under various conditions. BMC genomics 9, 512
• De Alencar Figueiredo L.F., Calatayud C., Dupuits C., Billot C., Rami J.F., Brunel D., Perrier X., Courtois B., Deu M., Glaszmann J.C. 2008. Phylogeographic evidence of crop neodiversity in sorghum. Genetics. 179(2). 997-1008
• Lecunff L., Garsmeur O., Raboin L.M., Pauquet J., Telismart H., Selvi A., Grivet L., Philippe R., Begum D., Deu M., Costet L., Wing R., Glaszmann J.C., D'Hont A. 2008. Diploid/polyploid syntenic shuttle mapping and haplotype-specific chromosome walking toward a rust resistance gene (Bru1) in highly polyploid sugarcane (2n ~ 12x ~ 115). Genetics. 180(1). 649-660.
• Raboin L.M., Pauquet J., Butterfield M., D'Hont A., Glaszmann J.C. 2008. Analysis of genome-wide linkage disequilibrium in the highly polyploid sugarcane. Theoretical and Applied Genetics. 116(5). 701-714.
• Deu M., Sagnard F., Chantereau J., Calatayud C., Herault D., Mariac C., Pham J.L., Vigouroux Y., Kapran I., Traoré P.S., Mamadou A., Gérard B., Ndjeunga J., Bezançon G. 2008. Niger-wide assessment of in situ sorghum genetic diversity with microsatellite markers. Theoretical and Applied Genetics. 116(7). 903-913.
• Guimarães P.M., Garsmeur O., Proite K., Leal Bertioli S.C.M., Seijo G., Chaine C., Bertioli D.J., D'Hont A. 2008. BAC libraries construction from the ancestral diploid genomes of the allotetraploid cultivated peanut. BMC Plant Biology. 8(14). 8
 

2007

• Jannoo N., Chantret N., Garsmeur O., Glaszmann J.-C., Arruda P., D\'Hont A. 2007 Orthologous comparison in a gene-rich region among grasses reveals stability in the sugarcane polyploid genome Plant Journal 50(4) 574-585
• O. Jaillon, J.-M. Aury, B. Noël, A. Policriti, C. Clepet, A. Casagrande, N. Choisne, S. Aubourg, N. Vitulo, C. Jubin, A. Vezzi, F. Legeai, P. Hugueney, C. Dasilva, D. Horner, E. Mica, D. Jublot, J. Poulain, C. Bruyère, A. Billault, B. Segurens, M. Gouyvenoux, E. Ugarte, F. Cattonaro, V. Anthouard, V. Vico, C. Del Fabbro, M. Alaux, G. di Gaspero, V. Dumas, N. Felice, S. Paillard, I. Juman, M. Maroldo, S. Scalabrin, A. Canaguier, I. Le Clainche, G. Malacrida, E. Durand, G. Pesole, V. Laucou, P. Chatelet, D. Merdinoglu, M. Delledonne, M. Pezzotti, A. Lecharny, C. Scarpelli, F. Artiguenave, M.-E. Pè, G. Valle, M. Morgante, M. Caboche, A.-F. Adam-Blondon, J. Weissenbach, F. Quétier and P. Wincker 2007 The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 449: 463-467
• Marcano M., Pugh T., Cros E., Morales S., Portillo E., Courtois B., Glaszmann J.-C., Engels J.M.M., Phillips W., Astorga C., Risterucci A.-M., Fouet O., Gonzalez V., Rosenberg K., Vallat I., Dagert M., Lanaud C. 2007 Adding value to cocoa (Theobroma cacao L.) germplasm information with domestication history and admixture mapping.Theoretical and Applied Genetics 114(5) 877-884
• Le Guen V., Garcia D., Mattos C.R.R., Doare F., Lespinasse D., Seguin M. 2007 Bypassing of a polygenic Microcyclus ulei resistance in rubber tree, analyzed by QTL detection New Phytologist 173(2) 335-345
• Siol M, Bonnin I, Olivieri I, Prosperi JM, Ronfort J 2007 Effective population size associated with self-fertilization: lessons from temporal changes in allele frequencies in the self annual Medicago truncatula. J. Evol. Biol., 20: 2349-2360
• Lacape M., Dessauw D., Rajab M., Noyer J.-L., Hau B.2007 Microsatellite diversity in tetraploid Gossypium germplasm : assembling a highly informative genotyping set of cotton SSRsMolecular Breeding 19(1) 45-58